DNA sequencing analysis: genomes and epigenetics

Main contents

  • High-throughput sequencing data.
  • Quality assessment (fastQC, others).
  • Reference alignment: Tuxedo.
  • Metagenomics: multiple references alignment.
  • Epigenomics: ChiP-seq and others
  • Population studies: CNV y GWAS.

Type: Mandatory
ECTS: 3
Semester:
PDF sheet: Download.

Teachers

Alicia García (agarmar@usal.es)

Laura Durán (laudupri@usal.es)

Description

The student will acquire the skills to handle high-throughput sequencing data. Specifically, que will be able to evaluate the data quality, align them against reference genomes, evaluate the alignment quality, and determine the coverage.